Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs2279256 chr10:1132852 G/A 1.75E-13 133 42.03 70.63 17.1 KM Plot
TGCT rs2291004 chr19:37997952 C/A 1.39E-13 134 46.3 35.37 17.1 KM Plot
TGCT rs2295954 chr6:15250052 C/T 5.56E-5 134 37.7 46.77 NA KM Plot
TGCT rs2303131 chr19:37936025 G/A 1.37E-13 134 45.47 37.53 17.1 KM Plot
TGCT rs2320204 chr17:39366358 C/T 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs2320205 chr17:39366360 G/C 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs2320206 chr17:39366361 C/A 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs2320231 chr17:39340910 T/C 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs2325847 chr20:2404050 G/A 0.000163 134 38.2 67.22 163.3 KM Plot
TGCT rs2358066 chr8:116908644 C/G 7.41E-7 134 45.7 28.7 18.83 KM Plot
TGCT rs2387299 chr10:1163427 A/G 1.5E-13 133 42.1 66.9 17.1 KM Plot
TGCT rs2387583 chr19:49461305 C/T 1.02E-5 134 42.03 52.43 8 KM Plot
TGCT rs238789 chr17:39381582 A/G 7.83E-7 132 13.17 56.7 42.27 KM Plot
TGCT rs238792 chr17:39378852 G/A 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs238794 chr17:39375993 T/A 6.24E-7 134 13.17 46.03 42.18 KM Plot